Scedosporium-ECMM Group


Pairwise sequence alignment
I have read the disclaimer and I agree with the conditions and limitations associated with the usage of the software First, select the most suitable options to perform the pairwise alignments, paste your raw unknown sequence and click on the "start alignment" button. Identifications will be performed in a monophasic way. This means that only DNA or protein sequences will be compared to produce a global similarity or probability coefficient between the unknown sequence and the reference sequence database. Results should be evaluated with care and a critical mind. Please contact the curator of the database if you feel that you need more explanations on how the comparisons are performed.


Select database:


Select table:


Select options:

Gap creation penalty (1-100):
Gap extension penalty (1-10):
Maximum alignments to display (2-1000):
Penalty for a nucleotide mismatch (default is -1):
Reward for a nucleotide match (default is 1):
Select algorithm:
Select sorting mode:
Select the reference file to be used for the alignment:
Search for records in currently selected table (slower)

Paste sequence to align: